rs47124184 SNP Detail

Summary

• ID
  rs47124184
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52466401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACACCTTT GAAAAAAATC CCTAAAAGGA
  AAATGTTTAT CCTTTAACAA CCATTGTGAC AAGGAGTTTG CTCCATTTTT GGATGATCAT
  TAAACTGTGA TTAAAGCAAT AATGCCTTGA CCATATATTG ATTCTGTGAA CAAAAGTTAG
  Y
  TCCCACTGCA ATCCCAGTGG CCTTTATTAT GCTTAACAGT CTTGGGACTT TCTTAGCACA
  CTCTTGTATG TGCTCTCAAG AATGGGTCCC GGATGATGTA ATGAGTATTA TGAGATCATC
  ACTACCAGGC CACGATCCTC TCAGATGGTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60733171	NES16376364	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	C		C	T	C	C		C
ss319720164	CHEV_1_52484086	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47124184					SNP	T	T	T	T	C	T	C	T	T	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60733171	NES16376364	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52466401 () rs orientation: forward

Symbol	Name	Function Class
Gm69377	predicted gene, 69377	177 bp upstream
Rr410861	regulatory region 410861	997 bp proximal
Rr410862	regulatory region 410862	1791 bp proximal