rs47124602 SNP Detail

Summary

• ID
  rs47124602
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117012690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGAGATTA GGGTGCACAG ACCCTGCACG TGGACACACT
  TCCATGTCCA GTCGCCAGCA CCGAGAAACC TGAGCCTTAC AAAGGTGATC ACAGCCACTC
  K
  TGTTCCCCAG CAAACACGCT CTAGCGCAGG GGAAGGCAGC CTCTCCCAGT CGTCCTCCCC
  CCGACCCCCG CACGCACCTT CGTGTTGGCA GCGGGCCGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147285260	ENSMUSSNP3877525	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47124602					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117012690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	within coordinates
Gm22980	predicted gene, 22980	1331 bp upstream
Gm26330	predicted gene, 26330	204 bp upstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	981 bp downstream
Rr398411	regulatory region 398411	426 bp upstream
Rr598069	regulatory region 598069	740 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	919 bp upstream
Snord55	small nucleolar RNA, C/D box 55	278 bp downstream
Tssr38607	transcription start site region 38607	1655 bp downstream
Tssr42956	transcription start site region 42956	351 bp downstream
Tssr42957	transcription start site region 42957	582 bp downstream
Tssr42958	transcription start site region 42958	629 bp downstream
Tssr42959	transcription start site region 42959	651 bp downstream
Tssr42960	transcription start site region 42960	692 bp downstream
Tssr42961	transcription start site region 42961	706 bp downstream