rs47124872 SNP Detail

Summary

• ID
  rs47124872
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14370874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCCCCCC CTTTTTCCTT
  TTGGAAAGGT GCTCTATGTC TTGTAATTTA CAAGCAGTAA ACCCTAGGAA CCAGTAAAAA
  CCGGGGAGCT TGTAGCCTCT AGGACTTGAT CGAGGAAATG ATGAATGGGG TGGGGGTGGG
  ATTGGGATTC CTGAGATTGT AATGTTTTGT CAGGCCAGCA AATCAGATTC CAGCCCAGAG
  T
  CTTGTTTATC AAGCAGTGTT TGGGGGTTCA TCATCTGGAG GCTAAAGCCC CACAAAAGCC
  TTCTGTGTCT CTGTCTCTTT GTCTCGCCGT CTCTTTTTCC ATCTCGCTGT CTCTGTCTCT
  TGTTTCTGAC GTTCCCTGTG TGTTTATCTC TGTTTCTGTG TGTGTATGTT CAAATTCTTC
  GCTAGTCAAA GAGATCTTTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138986228	ENSMUSSNP4274267	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47124872					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14370874 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6156	CpG island 6156			101 bp proximal
Pxk	PX domain containing serine/threonine kinase			Intron
				Noncoding-Transcript-Variant
Rr487874	regulatory region 487874			503 bp distal
Rr487875	regulatory region 487875			634 bp proximal
Tssr4245	transcription start site region 4245			700 bp downstream
Tssr124235	transcription start site region 124235			603 bp downstream