rs47125585 SNP Detail

Summary

• ID
  rs47125585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76555976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCCCAG AGGAACAGGG
  AGACCCAGCA GAGAGACTCC CCAAAGGGCC ATAGAAGCTC TGTGGATGAT GGCCATGTGG
  TAGGAAAACC ATCCTAGACC TGACCTTCTG TAGGAACCAA CACCGAGTGT CTCCCTCAGT
  GTTCAAATTT GTGCCACGTG AGTCACACCC AAGAGTCCCA GTTTCATTCC CAACTCCACC
  R
  GGAATGTCAA ACAGATGCTG AGCTGACACT TAAGTCTGCA GGCAACCTTC TGGACCACAA
  GGAGCAGGCT TTTGCAACCC CAGTTCCCAT ACCCCAAACC CACATGAAGC CTGGACTTTC
  TCCCTGGATA AGGGCAACTG ACAGCCAGTG TTGCATGTAC CAGATGCCCA GGTAGGTAGG
  CACAGAGCTA TGGCGTCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61288922	NES16903908	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47125585					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288922	NES16903908	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76555976 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Tssr94199	transcription start site region 94199	1694 bp upstream
Tssr94200	transcription start site region 94200	1770 bp upstream
Tssr98202	transcription start site region 98202	975 bp upstream
Tssr98203	transcription start site region 98203	1314 bp downstream
Tssr98204	transcription start site region 98204	1824 bp downstream