rs47126621 SNP Detail

Summary

• ID
  rs47126621
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:89603615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTGTTTG AGGAAACTGT
  TAGGTCTCTC AGAATGTCAG ACATAGAGAA CTACCACCAC CCCACACCTC AACCCGCATC
  CTAACCCTCT CTCTAGCCAG TCTTGCGGCC ATTCTGAACT GGAAGCCAGC TGCAGTCTCA
  GTCTGTGCTC TACCACTTCC AACCAGCAGG GGGCATGCCC AGACTCCATC GGATCATAGC
  W
  TGGCTCCCGC TGACGCAGTT GTGGCTCCGG ATGCCACACT TGGTGTGGTA GAATAGGGAA
  CCACAGATGA AGCATGTCCT GGCAAATACT TTGTAAATGT ATTTTACATG GCTCTGGGTC
  TTGTCTGGTC TACAGGACAC GGGCTATACG ACTTGAGGGA ACTGATTTGA TCTCTCTCTC
  CCCTCTGCCC CTCTCTCTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61194475	NES16707134	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47126621					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194475	NES16707134	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89603615 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	Intron
Rr614258	regulatory region 614258	within coordinates
Rr614259	regulatory region 614259	21 bp distal