rs47126976 SNP Detail

Summary

• ID
  rs47126976
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29979880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAACTCCC GCCATGACAG
  AGGACAGCTT TTCTATCGTG TCACTCCGCG TATAACCTCC GGCCGCTAAG GCAGCCATCA
  TGCTGTCGGA GACCAGTGTC CGTTACGCTT CTTAACAGCC GCCTGTAGCC AGCACCCACT
  CGAATAGCGA ATGGCCGCGG GAAAGCCGGC GCCACCGCCC ATTGGACGCA GCCGGCACCC
  M
  GGCTGGCCAA TCACAAAGCT TCCGGGTAGG CTCATTGCCC AATGGGAGAT AAGAGGCGGA
  GCTAAAGGAA GGTGGGGCCA GGGCCTGTCT ATTTCACTGC TTACTGAGTC TGGCTGGGTT
  TCTCTACTAA CCTGTGCTTT CTCTGTTCAT AGACACACAG CTTTTAACTT TGATGGAGCT
  CATCCTGTCT TTTGCAACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60991476	NES16140576	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47126976					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991476	NES16140576	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29979880 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	578 bp upstream
Cpgi18786	CpG island 18786	within coordinates
Rr400235	regulatory region 400235	within coordinates
Rr644765	regulatory region 644765	346 bp distal
Rr644766	regulatory region 644766	391 bp distal
Rr644767	regulatory region 644767	within coordinates
Rr644768	regulatory region 644768	443 bp proximal
Rr644769	regulatory region 644769	1390 bp proximal
Rr644770	regulatory region 644770	1781 bp proximal
Tssr65667	transcription start site region 65667	313 bp downstream
Tssr65668	transcription start site region 65668	267 bp downstream
Tssr65669	transcription start site region 65669	79 bp upstream
Tssr71721	transcription start site region 71721	31 bp upstream
Wdr62	WD repeat domain 62	36 bp upstream