rs47127973 SNP Detail

Summary

• ID
  rs47127973
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:16805249 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      C ATTCCCACTT CTTGGCCCTG GCATTCCCCT GTACTGAGGC
  ATATAAAGTT TGCACAACTA ATGGGCCTCT CTTTCCACTG AGGGCCAACT AGGCCATTTT
  C
  TGATTCATAT GCAGCTAGAG ACACGAGCTC CAGGGGGGTA CTGGTTAGTT CATATTGTTG
  TTCCACCTAT AGGATTGCAG ATCCCTTGAG CTCCTTGGAT A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss132026001	ENSMUSSNP5211951	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs47127973					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:16805249 () rs orientation: reverse

Symbol	Name	Function Class
Rr370925	regulatory region 370925	1599 bp upstream