rs47128598 SNP Detail

Summary

• ID
  rs47128598
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28855078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC CCCGCCCACC GCCACCACCC
  K
  GGGCCTTCCA AGCTCGCTCA CGCAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148642728	ENSMUSSNP3605002	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss322127382	CHEV_7_29940672	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47128598					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28855078 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	27 bp upstream
Cpgi18740	CpG island 18740	within coordinates
Fam98c	family with sequence similarity 98, member C	within coordinates
Gm73440	predicted gene, 73440	800 bp downstream
Rasgrp4	RAS guanyl releasing protein 4	1692 bp downstream
Rr400219	regulatory region 400219	459 bp upstream
Rr644490	regulatory region 644490	1425 bp distal
Rr644491	regulatory region 644491	within coordinates
Rr644492	regulatory region 644492	49 bp proximal
Rr644493	regulatory region 644493	520 bp proximal
Rr644494	regulatory region 644494	543 bp proximal
Rr644495	regulatory region 644495	668 bp proximal
Rr644496	regulatory region 644496	1657 bp proximal
Tssr65599	transcription start site region 65599	within coordinates
Tssr65600	transcription start site region 65600	18 bp upstream
Tssr65601	transcription start site region 65601	91 bp upstream
Tssr71610	transcription start site region 71610	37 bp upstream
Tssr71611	transcription start site region 71611	22 bp upstream
Tssr71612	transcription start site region 71612	64 bp downstream
Tssr71613	transcription start site region 71613	283 bp downstream
Tssr71614	transcription start site region 71614	310 bp downstream
Tssr71615	transcription start site region 71615	519 bp downstream