rs47129198 SNP Detail

Summary

• ID
  rs47129198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152949908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACGC CTGGTGCCAA GCGTGGCTGC
  Y
  TGAGTTCAGT CCCCGGAACT CGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147984240	ENSMUSSNP3543804	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320564071	CHEV_2_152933724	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47129198					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152949908 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	457 bp proximal
Hck	hemopoietic cell kinase	480 bp upstream
Rr567550	regulatory region 567550	within coordinates
Rr567551	regulatory region 567551	203 bp proximal
Rr567552	regulatory region 567552	519 bp proximal
Rr567553	regulatory region 567553	683 bp proximal
Tssr20863	transcription start site region 20863	315 bp downstream
Tssr20864	transcription start site region 20864	279 bp downstream
Tssr20865	transcription start site region 20865	486 bp upstream
Tssr20866	transcription start site region 20866	501 bp upstream
Tssr26882	transcription start site region 26882	1030 bp downstream