rs47130361 SNP Detail

Summary

• ID
  rs47130361
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49590904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGGGTTT TCTTCTTTTC
  TTTTCTTTTC TTTTCTTTTC TTTTCCTTTT CTTTTCTCTT CTCTTCTTTT CTTTCTTTCT
  TTTTTTTTTT TGAGGGATTT CATCATGTAG CCATGAAAAC CTCAAAGTTC TAGGAAACTG
  CAAACTATTT GGAAACTCTG TGCCAACCGT TACAGCCAAA GGTCAGACTT ATTTCTTCCT
  W
  TGTCACAATT TCTCGGCTAA GAATTTCCTG TGTGGCTTTT GAGTCACCGT TCATCCTGGG
  TTTTCTCCGG TAAGGTGATA GAGTTATATT TTCCCTCCTG TCCAGTCGCT TTTCTTTTAC
  CTTCTGTAAA ATCTTCTGCA GGGTATGCTA CCCATGAATC CCAATGTGCT AGTAAAAGTA
  CAAAGTTGTT CATACAGCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60460816	NES16446449	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	A	A	A	A	A	A	A	A	A	A
ss148122740	ENSMUSSNP867670	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47130361					SNP	T	T	A	A	A	T	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460816	NES16446449	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49590904 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516710	regulatory region 516710	1733 bp distal
Rr516711	regulatory region 516711	189 bp distal
Rr516712	regulatory region 516712	799 bp proximal
Rr516713	regulatory region 516713	1876 bp proximal
Tssr138713	transcription start site region 138713	71 bp upstream
Tssr141324	transcription start site region 141324	1832 bp upstream
Tssr141325	transcription start site region 141325	1803 bp upstream
Tssr141326	transcription start site region 141326	1762 bp upstream
Tssr141327	transcription start site region 141327	1739 bp upstream
Tssr141328	transcription start site region 141328	719 bp upstream
Tssr141329	transcription start site region 141329	249 bp downstream
Tssr141330	transcription start site region 141330	264 bp downstream
Tssr141331	transcription start site region 141331	277 bp downstream
Tssr141332	transcription start site region 141332	305 bp downstream
Tssr141333	transcription start site region 141333	1140 bp downstream
Tssr141334	transcription start site region 141334	1295 bp downstream