rs47130569 SNP Detail

Summary

• ID
  rs47130569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185046792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACAAATC TAGCCTGTAC
  ATGCTTAGCC TGAAAAAGAC TTCTTAAAAT CCCTAGTGTG GTGCTCAAGA CTCCTTCAGC
  CTGTCCCAGC CAGTTATTTT TTTTAATTTA TTTATTATTA TATATATTTA AGTACACTGT
  AGCTGTCTTC AGACAAACCA GAAGAGGGCC TCAGATCTCA CCACAGATGG TTGTGAGCCA
  Y
  CACATGGTTG CTGGGGTTTG AACTCAGAAC CTTCAGAAGA GCAGTCAGTG CTCTTAACTG
  CTGAGCCATC TCTCCAGCCC CCGGCCAGTT CTTAGTGACT GCCTTTCTAT CCCTCTCACA
  GCCCTGGAAT CCCATGGCTC CTACGCACAG CACACACTGC CACCCTGCCT CCCGCAGAGC
  ACTCTTCCCT GCCCTCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146427436	ENSMUSSNP6581760	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320174700	CHEV_1_187138474	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47130569					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185046792 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	796 bp downstream
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir194-1	microRNA 194-1	1210 bp downstream
Mir215	microRNA 215	903 bp downstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	903 bp distal
Tssr10601	transcription start site region 10601	921 bp downstream