rs47130804 SNP Detail

Summary

• ID
  rs47130804
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTATAA TTTAATAAGT
  GCAGAGACAG AGTTCTGTTT ATCTTTGGGT ATCTATCTTC TTAGGAAACA AATAACAACA
  GCCAGAGTCC TGGAGAGATG GCTCAGCAGT CAAGAGTACT TGTTCTTGCA GAAGATCCAA
  GTTCCATTCC CAGAATCTAC TCGGTGACGT ATAACACTCA TAACTCCAGT TCTAGGGGAG
  W
  CAATGCCCTC TTTTGACTTC CTCATGCACC AAATACACAG GTATGCACAG ACATATATGG
  GAACAAAAGG TTCATGCACA TAAATAAATC TAAAAAAAAT TAAGGTTCAG CAAACTAGCT
  AGCTTTTTGT TTCTGTTTCT GTTTGTTTGT TTTTCTGTTA GACAGGGTTT CTTTGTATAA
  CAGAGCCCTG GCTGTCCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647271	ENSMUSSNP5141307	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss322398756	CHEV_7_117910473	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47130804					SNP	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366166 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1247 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	1124 bp proximal
Rr653308	regulatory region 653308	834 bp proximal
Rr653309	regulatory region 653309	1462 bp proximal
Rr653310	regulatory region 653310	1963 bp proximal
Tssr68503	transcription start site region 68503	1104 bp upstream
Tssr68504	transcription start site region 68504	1147 bp upstream
Tssr68505	transcription start site region 68505	1179 bp upstream
Tssr68506	transcription start site region 68506	1210 bp upstream
Tssr68507	transcription start site region 68507	1656 bp upstream
Tssr68508	transcription start site region 68508	1871 bp upstream