rs47131423 SNP Detail

Summary

• ID
  rs47131423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42209165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAATCTAA GAAAATGCCT
  CGCACGAAGC AGATTCATCC CAGAAATCTC AGAGGTAAGG CTCTGTGTTC AGTGAAGAAA
  GGCTTCCAGT GACCCCCATC ATCAAGTGCA TTGCTGGTAC CAGGAATGCC TGTGGCCTCC
  TTAGGCACTG ACCCTGCTTC ATGGCCAGCA CCATTATGCC TCATTCCTCT TTGTCTTGTA
  Y
  AGTAACTGTC CCTTACCTGC TGGATGAATT AATCCCTCAA GAATTACAGT TCTTTTGTGG
  TGACCTGCTA AAGGCTGATA TTAATCATTT CTTAATAGGA ACTAGGGAAT CTGAAATGGA
  TGGTTGATGT TTTCTGATAA TTGATGTTAT GTTCATTTGT TCAAAAAAAG AATTCCTCCC
  CGATCCTTTA CGTGTCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52631031	NES15521418	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47131423					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52631031	NES15521418	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42209165 () rs orientation: forward

Symbol	Name	Function Class
Hivep1	human immunodeficiency virus type I enhancer binding protein 1	within coordinates
Rr271793	regulatory region 271793	1236 bp proximal
Rr281297	regulatory region 281297	1764 bp distal
Rr286087	regulatory region 286087	1207 bp proximal