rs47132171 SNP Detail

Summary

• ID
  rs47132171
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13285250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGAGGA AGCACTCTGC
  CAGGATGGCC TCTCACCTCC ATGGTGGCAG CTGACTTTTG CCTTTTGATG AAGATGAATA
  AAGGACAGGT AGTCACAGAA TTCCCATATA GTATAGAGAT GAACCCACAT TTCACAGGGT
  ACACAGCTGG CTAACAGAGG GAGGGGCCAT CATTAGCACA AGTGCTAGAG TTTGGACAGC
  W
  GGAGCACACC GTCTGCAGTC TCTGCAGAGA GAGATCTGAA ATGTTTAGGA GGTGTCTCCT
  GACTGACATG TGGCAAGGCC AGTGTGAGCA GGGACCTGAC ACCTGAGCTT CATTCCTGGC
  ACAGAGGCAG TAAGTTCTTT CTTTTAATGT CATGCAAGTC TCTTTTGCCT GGAAGACTCT
  TATTTTATGT CCTATATCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60327977	NES15829353	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47132171					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60327977	NES15829353	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13285250 () rs orientation: forward

Symbol	Name	Function Class
Ncoa2	nuclear receptor coactivator 2	within coordinates
Rr370880	regulatory region 370880	within coordinates