rs47132288 SNP Detail

Summary

• ID
  rs47132288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115980845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATGCCT ACACAGCAAT
  GTATTTCTAA AAATATATTT ATTGAATTCC CGCTGTTTTC TTGGCCCTGA GTGTAGGGTC
  TGGGCATACA GAGATGGAAA ATGGAAATTT AGTTTGAACG TTTAAAATAG TGTTTCTGGA
  ATTGGTGCAA AGTTATGGAC AATTTTTATT TCATCTGTGG TCCTTAAGGA TAAATAGCAA
  Y
  GTCAGAAATA ATGTAGCCGG TATTTCCATC CATCCTTATA AGAAAACTGG ATTAATTTCC
  TATCTGATTC AATATTACAG AGAGCAATCA TCAGGGTAGC CCAGATAAAT CACTTGACTC
  AAAAAATCAA GCTCAATTTC TCATAAAATA CAGGGCTGCC AGGATTTTTT TTCTTTTGAG
  TGTATCTCTA GTATGAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61318504	NES16935531	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47132288					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61318504	NES16935531	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115980845 () rs orientation: forward

Symbol	Name	Function Class
Ptprr	protein tyrosine phosphatase receptor type R	within coordinates
Rr439277	regulatory region 439277	1027 bp distal
Tssr95844	transcription start site region 95844	1038 bp downstream
Tssr95845	transcription start site region 95845	1018 bp downstream
Tssr95846	transcription start site region 95846	988 bp downstream