rs47132892 SNP Detail

Summary

• ID
  rs47132892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45433132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAACTTAT GAACAAACGG
  CGGCGTCAAT CTTCCCGCCC TCATTACTGG TAGCCAGTGC CCGCCCGGCC TGTCACCCTC
  AGGCTAAAAC CCCCGCAGGT GGCGCAACGG ACAACCTAAG CCTCCTCGCT AGACCAACAA
  GGACTGCATT TCCCAGAAGA CTCTGCGCGG GCCCACGACT CCCTGTGAGC TTCTCTTTCT
  Y
  CAGGCTCTGG TTCTTCAGTC AGGGGGTCCG CTTTGCGTGC TCACTCCCCG GTCACTGCAA
  TCCCATTCCC TGTACCTTTC TGAACTTCCA TTCCACGATG ATCCTGCCTC AGTTTCTCCA
  GTGAGCCCCC CGCGAGGCTT CCCCTCCTCC CCGTGCCCCC AGTGAGCCGT GCTGCGCGCG
  CAGCTCTGGT CCAGCCTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149145008	ENSMUSSNP563463	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47132892					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45433132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19088	CpG island 19088	within coordinates
Cpgi19089	CpG island 19089	1675 bp proximal
Lmtk3	lemur tyrosine kinase 3	mRNA-UTR
Rr646575	regulatory region 646575	within coordinates
Rr646576	regulatory region 646576	250 bp proximal
Rr646577	regulatory region 646577	951 bp proximal
Tssr66636	transcription start site region 66636	within coordinates
Tssr66637	transcription start site region 66637	175 bp upstream
Tssr66638	transcription start site region 66638	1623 bp upstream
Tssr66639	transcription start site region 66639	1862 bp upstream
Tssr72472	transcription start site region 72472	1318 bp downstream