rs47132977 SNP Detail

Summary

• ID
  rs47132977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58670024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG GAGATGCATG AAGGAACAGG
  Y
  ATGCCTGTTC TTATACCCAG CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146566763	ENSMUSSNP816335	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325872643	CHEV_19_58756082	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47132977					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58670024 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	within coordinates
Tssr157283	transcription start site region 157283	1843 bp downstream
Tssr157284	transcription start site region 157284	1535 bp downstream
Tssr157285	transcription start site region 157285	830 bp downstream
Tssr157286	transcription start site region 157286	783 bp downstream
Tssr157287	transcription start site region 157287	755 bp downstream
Tssr157288	transcription start site region 157288	154 bp upstream
Tssr159962	transcription start site region 159962	192 bp downstream