rs47133912 SNP Detail

Summary

• ID
  rs47133912
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:52224438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCT CCACTTACAA TAAAGGTATC
  G
  GGATGGTGAG CTCGGGAGAA TCCAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139498647	ENSMUSSNP2691211	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324626449	CHEV_14_52606656	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47133912					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52224438 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef40	Rho guanine nucleotide exchange factor 40			Intron
				mRNA-UTR
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi6430	CpG island 6430			1482 bp distal
Cpgi6431	CpG island 6431			875 bp distal
Gm16617	predicted gene, 16617			within coordinates
Rr491848	regulatory region 491848			475 bp distal
Rr491849	regulatory region 491849			1836 bp proximal
Tssr128466	transcription start site region 128466			1851 bp downstream