rs47134641 SNP Detail

Summary

• ID
  rs47134641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164285831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCT GTGACCTCTG GCGAGATGGA
  Y
  CAGGGACAAG GAGGGAAAGT CACCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145978934	ENSMUSSNP3656874	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47134641					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164285831 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Cpgi945	CpG island 945	within coordinates
Gm32391	predicted gene, 32391	261 bp upstream
Gm70485	predicted gene, 70485	1349 bp downstream
Gm70492	predicted gene, 70492	211 bp downstream
Rr422210	regulatory region 422210	1653 bp distal
Rr422212	regulatory region 422212	152 bp distal
Rr422213	regulatory region 422213	within coordinates
Rr422214	regulatory region 422214	2 bp distal
Rr422215	regulatory region 422215	83 bp proximal
Rr422216	regulatory region 422216	141 bp proximal
Rr422217	regulatory region 422217	254 bp proximal
Rr422218	regulatory region 422218	474 bp proximal
Tssr9788	transcription start site region 9788	255 bp upstream
Tssr9789	transcription start site region 9789	274 bp upstream
Tssr14746	transcription start site region 14746	250 bp upstream
Tssr14747	transcription start site region 14747	83 bp downstream
Tssr14748	transcription start site region 14748	463 bp downstream