rs47136941 SNP Detail

Summary

• ID
  rs47136941
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:92492705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCT CAAACGAAAC CATTCAAAAA
  W
  TTTACAGTGA TTTTATTCTT TGGTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135481287	ENSMUSSNP6978637	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47136941					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:92492705 () rs orientation: forward

Symbol	Name	Function Class
Smcp	sperm mitochondria-associated cysteine-rich protein	within coordinates
Tssr30302	transcription start site region 30302	1265 bp downstream
Tssr30303	transcription start site region 30303	1005 bp downstream
Tssr30304	transcription start site region 30304	982 bp downstream
Tssr30305	transcription start site region 30305	959 bp downstream
Tssr34305	transcription start site region 34305	1384 bp upstream
Tssr34306	transcription start site region 34306	1222 bp upstream
Tssr34307	transcription start site region 34307	1008 bp upstream
Tssr34308	transcription start site region 34308	993 bp upstream
Tssr34309	transcription start site region 34309	961 bp upstream
Tssr34310	transcription start site region 34310	949 bp upstream
Tssr34311	transcription start site region 34311	917 bp upstream
Tssr34312	transcription start site region 34312	881 bp upstream
Tssr34313	transcription start site region 34313	802 bp downstream
Tssr34314	transcription start site region 34314	1445 bp downstream