rs47139408 SNP Detail

Summary

• ID
  rs47139408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59789325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAAGAACA AGCTGTTAGT TAGACAGAGT AGAAGCCTGT
  AGCCCCTATT CCAGAGCCCC AAGAGAAAGT ATACCAGCCC ACCCCTTTTT TGAGAGCACA
  R
  TGGCTGTGTT CCAGAGATAA CCAAGGTTGT ACCTCATACT ACAGTGGGAC TTGGTAATGA
  GTAAGAGTCA CCCAGGTGGT ACTGGTTTTA AAGGCATGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149079736	ENSMUSSNP6550882	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss324357482	CHEV_13_59742872	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47139408					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59789325 () rs orientation: forward

Symbol	Name	Function Class
Golm1	golgi membrane protein 1	within coordinates
Tssr4093	transcription start site region 4093	1274 bp upstream
Tssr122874	transcription start site region 122874	1339 bp upstream
Tssr122875	transcription start site region 122875	1322 bp upstream