rs47142129 SNP Detail

Summary

• ID
  rs47142129
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:41396919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATATTGTT TTAAGAGAAG
  CCTGGAAATA CAAGTTAATT GCCTTGTATA ATTGAAATGC CCACAGAGGA GATAACTTGT
  GTTTTCTGGC AATTACGGGG TTAGCTGCAG CATTCCGAAG GCTGCATCCA TTATCAGGCT
  ACACTGTTGT GAACAGCGTG TCTTAAGAAC GAGTACTTTA TGAATGGTTC TTCGTGTCCT
  K
  TTTGCAGTAA ATACGTGTTG AGATCCAGGG CTTCAGCAAA GGAGAATGGT GCAGGCGACT
  AGTTTCTAGA AAAGAAAGGA ACTTAGCTCC ATTCTGGCCT GCTAAATTCT AATTTCTGGA
  TTGTTTGGTT TAGTGTTCCC GAAGCCCCAA CCATACAGTT GTTTTGTTGC CACTTTGTAA
  CTAATTGTGT TGCTTGTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52250148	NES15259021	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47142129					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52250148	NES15259021	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:41396919 () rs orientation: forward

Symbol	Name	Function Class
Cd164	CD164 antigen	Intron
Cpgi1473	CpG island 1473	722 bp distal
Gm67065	predicted gene, 67065	1510 bp upstream
Rr401849	regulatory region 401849	1684 bp downstream
Rr430366	regulatory region 430366	1521 bp distal
Rr430368	regulatory region 430368	1761 bp distal
Rr430369	regulatory region 430369	1499 bp distal
Tssr93048	transcription start site region 93048	1476 bp downstream
Tssr93049	transcription start site region 93049	1443 bp downstream
Tssr93050	transcription start site region 93050	1407 bp downstream
Tssr93051	transcription start site region 93051	1180 bp downstream
Tssr93052	transcription start site region 93052	1090 bp downstream
Tssr93053	transcription start site region 93053	1064 bp downstream
Tssr93054	transcription start site region 93054	996 bp downstream
Tssr93055	transcription start site region 93055	962 bp downstream
Tssr93056	transcription start site region 93056	934 bp downstream
Tssr93057	transcription start site region 93057	923 bp downstream
Tssr93058	transcription start site region 93058	389 bp downstream
Tssr97407	transcription start site region 97407	1820 bp upstream
Tssr97408	transcription start site region 97408	1803 bp upstream