rs47142243 SNP Detail

Summary

• ID
  rs47142243
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:8543666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATACTTT TGCTCCAAGC
  ACTTTAACCA CTGAGAGAAA TCCCATTTGT TCTTGTTGAG AAGGTTTTGA TTTTGACAGA
  TGTATGCCAA TTGATCAGAT TGTTAAAACA AGTTTTCAAA GCAGTTAGGA CATTGGAGAA
  AATACACGAT TTATGGCATT CAAATGAATC AGGGAGGATT TTCCTTAAAG CAAGCAGACA
  Y
  CATCGGAAAA TGCCCTTTTT CTGTTGGTTT TTTTTCAGGA ACCAGGAACA TTCCACGGTA
  AGAACACAGA CTGCTCTTCC ATTACGTCGG AGCTTGGGAA TGGGAGAGAA ACATCTCAAG
  AAAATGAAGG AAGCGTGGAA GAAGGAGAAG ATCTCGATTT CTGAGTGTTA CTTAAAAGAA
  ACTTCCTCGA AAGCCCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60683966	NES16235406	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs47142243					SNP	C	C	C	C	C	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60683966	NES16235406	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:8543666 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21347	CpG island 21347	293 bp proximal
Rr206822	regulatory region 206822	within coordinates
Trpc6	transient receptor potential cation channel, subfamily C, member 6	477 bp upstream
Tssr83785	transcription start site region 83785	534 bp upstream
Tssr83786	transcription start site region 83786	562 bp upstream
Tssr83787	transcription start site region 83787	835 bp upstream