rs47142392 SNP Detail

Summary

• ID
  rs47142392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:23472542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGTAGA GCCATCCACT
  TAATGTCGCC TGCTACAAGA ATAGATGTTT GTCAAATGTG AATCAGACCT GCTAGGGCCC
  TTATCTAGTC TGTTCATTTC AATTTTCTTC TCTGAGATAA CTTGAAAATG TCTGTAACTA
  GAAAGACAAT GTATGTCATA TCAGTATAAA TGGCTTATGA ATGAAATGTC ACTCTGAAAA
  Y
  GATGCAATGG AATAATTGCT GTGTTTTTAC TAATACTATG TAAACAGTAT TAGTACTTGT
  TCTTGCACAG CACATATGTT TGCTTTCCAG CATCCACTTT ACAGCTTACA CAGGGGCTCC
  AGCTCTGTCT TCTTGTGTCC ATGGGCCCAG ATATGCATGC ATTCCACTTA TATGTATATG
  CAGGAATAGA AAATACATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52537073	NES15597660	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47142392					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52537073	NES15597660	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:23472542 () rs orientation: forward

Symbol	Name	Function Class
Cdh18	cadherin 18	within coordinates
Cpgi6966	CpG island 6966	1506 bp proximal
Gm56739	predicted gene, 56739	1971 bp upstream
Rr499807	regulatory region 499807	1165 bp distal
Tssr130794	transcription start site region 130794	1998 bp upstream