rs47143090 SNP Detail

Summary

• ID
  rs47143090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122670628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA TCCCTAACCC TAGGCACATT
  Y
  CTGCACAGTA ACACTAGCAA GTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145812207	ENSMUSSNP3780711	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss322846785	CHEV_8_124467789	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47143090					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122670628 () rs orientation: forward

Symbol	Name	Function Class
Car5a	carbonic anhydrase 5a, mitochondrial	within coordinates
Rr671979	regulatory region 671979	520 bp distal
Rr671980	regulatory region 671980	1005 bp proximal
Tssr83252	transcription start site region 83252	960 bp downstream
Tssr83253	transcription start site region 83253	997 bp downstream