rs47144244 SNP Detail

Summary

• ID
  rs47144244
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:9736094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCACTTGC ATCGCTCTGA AGTCCTGATA TTGGGACCAT
  CTTATAGCCC TTCTGTGGGG AACTGAGTGG GGAAAAGAGC CACCATTTAG ACAGGACCAG
  S
  CGCAGTGGAT GAGCAATGTA AGCCCTAAAA CATGGGGGCT GGAAATCAAC CCTAACCAAG
  CCTGCAGCCC TTGGCACATG CTTGTTTCTG CAAAACAGAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63642665	NES17050935	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47144244					SNP	C	G	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63642665	NES17050935	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9736094 () rs orientation: forward

Symbol	Name	Function Class
D16Mit183	DNA segment, Chr 16, Massachusetts Institute of Technology 183	1572 bp distal
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	within coordinates
Tssr139889	transcription start site region 139889	1525 bp downstream
Tssr139890	transcription start site region 139890	1568 bp downstream