rs47144450 SNP Detail

Summary

• ID
  rs47144450
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84491083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAATATGAA TGAGAAAAAC TGAGTAATAA AGATAGCAGA
  CAGAGCTGGG CATGGTGGCA CACGCCTTTA ATCCCAGCAC CCAGGTTGCA GAGGCAGGCA
  R
  ATTTCTGAGT TCAAAGCCAG CCTGGTCTAC AAAGTGAGTT CCAGGACAGC CAGGACTATA
  CAGAGAGACC CTGTCTCAAA AAACAAACAA ACAAAGATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146833663	ENSMUSSNP6371792	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss320371853	CHEV_2_84500896	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47144450					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84491083 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Btbd18	BTB domain containing 18			Intron
				Noncoding-Transcript-Variant
Cpgi11859	CpG island 11859			1320 bp distal
Gm28635	predicted gene 28635			Intron
Rr560294	regulatory region 560294			1238 bp distal
Rr560295	regulatory region 560295			128 bp distal
Rr560296	regulatory region 560296			253 bp distal
Rr560297	regulatory region 560297			118 bp distal
Tssr18670	transcription start site region 18670			1657 bp downstream