rs47145460 SNP Detail

Summary

• ID
  rs47145460
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122036849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATAGCATT GCTGCTGGCT GCTTCTCCAA TCGCAGCCCT
  ATCTGTCCTG TGCTGTGACA TTTATACTAT CATAGTTCAT CTACAAACCC GTCACTCCCA
  W
  CTGCCACCAA GAGGTTTTAA AAAATAGCTC TTTAAAAAAA ACTTTTATTA CAATAGATCA
  ACTAGACAAA GTGCATTAAT TGTGTAAGGC TGAGTTACA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135737727	ENSMUSSNP4297167	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320909872	CHEV_3_121946118	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47145460					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122036849 () rs orientation: forward

Symbol	Name	Function Class
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	within coordinates
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1999 bp upstream
Rr584261	regulatory region 584261	86 bp distal
Rr584262	regulatory region 584262	within coordinates
Rr584263	regulatory region 584263	within coordinates
Rr584264	regulatory region 584264	653 bp proximal
Rr584265	regulatory region 584265	1542 bp proximal
Tssr31477	transcription start site region 31477	71 bp downstream