rs47146475 SNP Detail

Summary

• ID
  rs47146475
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57532746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTATGAT GTGTGTGAGT
  TTGGAGCACA GGGTGCAAGG AGGAGGAAGG CTGGGAGGGA ACTAGGCAGG GTGAGCAGGA
  CCTTGTGCCT GGCAAGGAAG ACTTTGACTC TACAGAAGTG GGAGCCACAG AGGGTTGTAG
  GGAGAGAAAG GAGGGAACTC CACTAGGGTT TTAACAGGGG CCCTCTACTG GGCAAAGTGG
  W
  CTGAGTTACC AGTAATTCTT CCCAAACTTC AGATAGGGCA ACTCAAGTTC AGGGGGTTTC
  CCTGGAGTTG GATGCCTCAC TCTATGGGTC TTCCTAGGTC TCTGCAGTGA TCGTTATGTA
  TAGCCATTTG CTCATGGACC ACCTCAGAGG ACTGAGTCTC AGAGGAGAGG GTCTCAAAGG
  GGAGGGGACT TGGAGGGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62812178	NES17355660	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47146475					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812178	NES17355660	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57532746 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	931 bp distal
D17Mit20	DNA segment, Chr 17, Massachusetts Institute of Technology 20	1701 bp proximal
Tssr145382	transcription start site region 145382	1883 bp downstream
Tssr145383	transcription start site region 145383	1806 bp downstream
Tssr145384	transcription start site region 145384	1636 bp downstream
Tssr145385	transcription start site region 145385	464 bp downstream
Tssr145386	transcription start site region 145386	279 bp upstream
Tssr145387	transcription start site region 145387	510 bp upstream
Tssr145388	transcription start site region 145388	1092 bp upstream
Tssr148950	transcription start site region 148950	1853 bp upstream
Tssr148951	transcription start site region 148951	1824 bp upstream
Tssr148952	transcription start site region 148952	1764 bp upstream
Tssr148953	transcription start site region 148953	1583 bp upstream
Tssr148954	transcription start site region 148954	1558 bp upstream
Tssr148955	transcription start site region 148955	1413 bp upstream
Tssr148956	transcription start site region 148956	1380 bp upstream
Tssr148957	transcription start site region 148957	794 bp upstream
Tssr148958	transcription start site region 148958	631 bp upstream
Tssr148959	transcription start site region 148959	425 bp upstream
Tssr148960	transcription start site region 148960	271 bp downstream
Tssr148961	transcription start site region 148961	308 bp downstream
Tssr148962	transcription start site region 148962	454 bp downstream
Tssr148963	transcription start site region 148963	506 bp downstream
Tssr148964	transcription start site region 148964	539 bp downstream
Tssr148965	transcription start site region 148965	1050 bp downstream
Tssr148966	transcription start site region 148966	1067 bp downstream