rs47146914 SNP Detail

Summary

• ID
  rs47146914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171182088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG AGGAGAAAAG AGGAAGAAGA
  Y
  ACCATGGGAA AGGTGGATCA TGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss119997780	PARCsnp_1.12967	PARC_SEQ	INBRED	f	SNP		C	T
ss119999718	PARCsnp_1.02127	PARC_SEQ	INBRED	f	SNP		C	T
ss146160870	ENSMUSSNP3149111	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320118199	CHEV_1_173284651	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs47146914					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171182088 () rs orientation: forward

Symbol	Name	Function Class
Gm37154	predicted gene, 37154	within coordinates
Pfdn2	prefoldin 2	within coordinates
Rr423296	regulatory region 423296	1021 bp proximal
Rr423297	regulatory region 423297	1275 bp proximal
Rr423298	regulatory region 423298	1373 bp proximal
Rr423299	regulatory region 423299	1636 bp proximal