rs47147836 SNP Detail

Summary

• ID
  rs47147836
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93271493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GCGCGGCGCG GGGCAGCAAC AGTCGCAGGA GATGATGGAG
  GGTGAGCGGC CCCTGTGGGT GACCGGGGAG CGGCGAGCTT CGGGCTGGGC GGTCACGGCC
  W
  CTTGCGGGAT CGGAATTCGG CCTCCAGCCT CCGGCCACAG CCACAGAGCT CTGACAGCTG
  CCAATATGGC TGGACAGCCA GGGAGGCTCG GAGCCCGGGA G                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss144957783	ENSMUSSNP1034463	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs47147836					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93271493 () rs orientation: forward

Symbol	Name	Function Class
Cpgi598	CpG island 598	within coordinates
Pask	PAS domain containing serine/threonine kinase	256 bp upstream
Ppp1r7	protein phosphatase 1, regulatory subunit 7	within coordinates
Rr366968	regulatory region 366968	809 bp downstream
Rr396176	regulatory region 396176	47 bp downstream
Tssr163	transcription start site region 163	80 bp downstream
Tssr8169	transcription start site region 8169	99 bp downstream
Tssr13015	transcription start site region 13015	1199 bp upstream
Tssr13016	transcription start site region 13016	1174 bp upstream
Tssr13017	transcription start site region 13017	1151 bp upstream
Tssr13018	transcription start site region 13018	1140 bp upstream
Tssr13019	transcription start site region 13019	968 bp upstream
Tssr13020	transcription start site region 13020	882 bp upstream
Tssr13021	transcription start site region 13021	860 bp upstream
Tssr13022	transcription start site region 13022	247 bp upstream