rs47148609 SNP Detail

Summary

• ID
  rs47148609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44022651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAATAAA CTCTTTGCAA
  AACAGAACAT CAATTAATAT GGACAAATGT CTGTATTCGC TAAGGTCTGC TTAGGCTACT
  CTGGCCACAG CTACCACAAC CCTCAGGGCA CACTGCTGGC CTATGATGAA GGTGATAATG
  TGTGACACTG GTCATGCTTT GACCCCATTA TGCAGTAAGT ATTTCTATGA AAATAACACA
  R
  GATTAGCATG CTTGCCAAGG TCAAGGTGGA AAGATTTTAT GAGTGAATTG CAGGAAGAGA
  GGCAGCCATA TTCAGCCTAG TGTATGGAAA GAAACAACGG GCTTTAAGGA TGGTCACTCT
  AAAGCCGCAG ATGTTCATTC ACAGGATACA GAAAATCTGG AGCCGTAAGG TATCTTAGCA
  ATGGTCAGCT CTTCTAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52252476	NES15252660	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	G	A	A	G	A
ss147091184	ENSMUSSNP6924440	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47148609					SNP	G	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52252476	NES15252660	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44022651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1509	CpG island 1509	1802 bp proximal
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
D10Mit38	DNA segment, Chr 10, Massachusetts Institute of Technology 38	570 bp distal
Gm67081	predicted gene, 67081	1403 bp upstream