rs47149164 SNP Detail

Summary

• ID
  rs47149164
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57529891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGAAAGG GGGTAGGGAG
  AGAAAGAGAG AGAGAGAAAG AAAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGACTCACCG TGCCAATACA GGAATCCTTC ACATCCACCC ACACAGAGTC
  AGCCACCACC TCCCTCTGGC CACTAGCTCC AATCAGGGTG TAGTAAGCCA CCAGGCGAAA
  K
  GAAGGAATAA ACTCTGGAGT GATGGGCAGG GACAAGACCA CCAGGTCCTG GCCAGGCTCC
  CGAACCTGGC GGCCTGCCTT CAGGAGCTTC CCCTTGTTCA TAACCTGGAG GGATGATGGG
  CTAGCATAAG AACCAGGACA GGGCTAGGTA GAATGGGTAC AGGAGACCCC AGGGCTGGGC
  ATGAATCCCT GGGGTACTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62812205	NES17355725	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47149164					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812205	NES17355725	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57529891 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	1431 bp proximal
Gm65552	predicted gene, 65552	1381 bp downstream
Tssr145377	transcription start site region 145377	660 bp downstream
Tssr145378	transcription start site region 145378	221 bp upstream
Tssr145379	transcription start site region 145379	302 bp upstream
Tssr145380	transcription start site region 145380	331 bp upstream
Tssr145381	transcription start site region 145381	397 bp upstream
Tssr145382	transcription start site region 145382	927 bp upstream
Tssr145383	transcription start site region 145383	1043 bp upstream
Tssr145384	transcription start site region 145384	1176 bp upstream
Tssr148935	transcription start site region 148935	1839 bp upstream
Tssr148936	transcription start site region 148936	1818 bp upstream
Tssr148937	transcription start site region 148937	1797 bp upstream
Tssr148938	transcription start site region 148938	1491 bp upstream
Tssr148939	transcription start site region 148939	962 bp upstream
Tssr148940	transcription start site region 148940	618 bp upstream
Tssr148941	transcription start site region 148941	545 bp upstream
Tssr148942	transcription start site region 148942	45 bp upstream
Tssr148943	transcription start site region 148943	5 bp upstream
Tssr148944	transcription start site region 148944	within coordinates
Tssr148945	transcription start site region 148945	28 bp downstream
Tssr148946	transcription start site region 148946	53 bp downstream
Tssr148947	transcription start site region 148947	292 bp downstream
Tssr148948	transcription start site region 148948	344 bp downstream
Tssr148949	transcription start site region 148949	399 bp downstream
Tssr148950	transcription start site region 148950	964 bp downstream
Tssr148951	transcription start site region 148951	1005 bp downstream
Tssr148952	transcription start site region 148952	1046 bp downstream
Tssr148953	transcription start site region 148953	1230 bp downstream
Tssr148954	transcription start site region 148954	1281 bp downstream
Tssr148955	transcription start site region 148955	1428 bp downstream
Tssr148956	transcription start site region 148956	1461 bp downstream
Tssr148957	transcription start site region 148957	1989 bp downstream