rs47150875 SNP Detail

Summary

• ID
  rs47150875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGCTTG TGGGAGCCCT
  GGGCTCATTT CCTGGTCTCT CTGCCGTAGT GTGCATTTCT AGAAATGGTT TAAAAATTCT
  CAGCGACTGG TAAGAGAGAG AAATCGAGTT TCTTTTTCTT TTTTCTTGCT AGCCCATCAT
  ATAAGGGTAA ACTGGGGGGC ATGAAAGTAA AACAACGAAT GGTTTTGCTT TCCTTTAATC
  Y
  GTGCATTGAG GAAAAGGTTA TGGTGTAGCT GGTATATCAG ACTGTCGATG GAAATTATTT
  CCTATTTAAC AAATAGGCCC AGAGACGAGT AACTCGTTTG GGAAAGCCTC TTTTAAAATG
  CCTTCAGGGG CTGGAGAGAT GGCTCAGCGG TTAACAGTAC TGACTGTTCT TTCAGAGATC
  CTGAGTCCTA TCCCCAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874532	ENSMUSSNP2469561	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320958011	CHEV_3_127600586	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47150875					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1145 bp distal
Fam241a	family with sequence similarity 241, member A	1345 bp upstream
Rr398009	regulatory region 398009	1095 bp downstream
Rr584896	regulatory region 584896	1649 bp distal
Rr584897	regulatory region 584897	854 bp distal
Tssr35608	transcription start site region 35608	1435 bp upstream
Tssr35609	transcription start site region 35609	1398 bp upstream
Tssr35610	transcription start site region 35610	1331 bp upstream