rs47151382 SNP Detail

Summary

• ID
  rs47151382
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTATTGT TATTATTATT
  ATTATTATTA TTATTATTAT TATTATTATT ATTATTATTA TTATTTTCGA GACAGGGTTT
  CTCTGTGAAG TCCTGGCTGT CCTGGAACTC ACTCTGTAGA CCGGGCTGGC CTCGAACTCA
  GAAATCTGCC TGCCTCTGCC TCCCGAGTGC TGGGATAAAA GGTGTGCGCC ACCAACGCCC
  R
  GCTACCTCAT TATTTTTTAA TGTATAAATG AGCTTGAAAG TGTGTGTGGG GTGGTGCAGT
  GACTCATTCT CTCCACTAGG GTTCAGTCAG GCCCAGCCTT TTCAGCCCCG TAACTGTAGA
  GATGCAGGTT AACTTTTTTT TTCCCCTTCT AATTACAAAA CTACTTTTAA TACTTTGAGG
  TATGTCGCAT ACCTCAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147738298	ENSMUSSNP5747421	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss323532329	CHEV_10_127649945	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47151382					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048758 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	835 bp distal
Cpgi2388	CpG island 2388	190 bp proximal
Rr402345	regulatory region 402345	878 bp downstream
Rr402346	regulatory region 402346	within coordinates
Spryd4	SPRY domain containing 4	1095 bp upstream
Tssr99849	transcription start site region 99849	1114 bp upstream
Tssr99850	transcription start site region 99850	1066 bp upstream