rs47151395 SNP Detail

Summary

• ID
  rs47151395
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135692924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG AAGACATAGT AGGAAGAGAG
  G
  AATAACTGAG TTGGCAGATC TGTCC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145545502	ENSMUSSNP1023680	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss319993127	CHEV_1_137661763	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47151395					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135692924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	353 bp proximal
Gm70736	predicted gene, 70736	191 bp downstream
Phlda3	pleckstrin homology like domain, family A, member 3	933 bp upstream
Rr372092	regulatory region 372092	85 bp upstream
Rr419268	regulatory region 419268	959 bp distal
Rr419269	regulatory region 419269	443 bp proximal
Tssr223	transcription start site region 223	884 bp upstream
Tssr224	transcription start site region 224	1003 bp upstream
Tssr8974	transcription start site region 8974	899 bp upstream
Tssr8975	transcription start site region 8975	1021 bp upstream
Tssr8976	transcription start site region 8976	1032 bp upstream
Tssr8977	transcription start site region 8977	1051 bp upstream
Tssr8978	transcription start site region 8978	1055 bp upstream