rs47152120 SNP Detail

Summary

• ID
  rs47152120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38634742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGTAGTGA GGATGAGGAT TCACCAAACA AGCAATACCT
  ACTGGTAACT TATGTGTCTG GTACCACATT AAAAAACCTA TGGACAGTCA AGGTGGATGA
  R
  AACTAACCTG TTGAATGTCA AATAAAGTTG CAGAACTCCC CCCCCCAAAA AAAAGATAGT
  CTAAAGTGCT CTTACGGGCT ACTTAAAAAT GCCATTCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60446719	NES16430052	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	G	A		G	A	A	G		A
ss148000211	ENSMUSSNP5692409	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss325150354	CHEV_16_38814493	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47152120					SNP	G	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446719	NES16430052	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38634742 () rs orientation: forward

Symbol	Name	Function Class
Gm15803	predicted gene 15803	within coordinates
Rr515903	regulatory region 515903	1533 bp distal
Rr515904	regulatory region 515904	1636 bp distal
Tex55	testis expressed 55	within coordinates