rs47153031 SNP Detail

Summary

• ID
  rs47153031
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134295623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCAGCGT TGGCGGGCTC
  CGGGACGGGC GGGGGCGGGG GCGGCTCCGT GCTCTTTAGC CTCTTGGTGG GTGGAGAATA
  GTCATCATCT TGAAAAAGAA AACCTTTGTT ACCGGGGGAA CCAGCTGCTG GGTGTCAGCG
  TGGTTTGAGG GCAACTCTAG CCACTCACGA GGACTTCCTA TGCTCCCTCG CTGCAGCTCC
  R
  CGCTACACCA CTGCCCGCTG CACCGGCCAG GGCAGCTGCT CATCCCCTCT GACCAGTTTC
  TCCCCTAAGA ATTTTCATGG CTAGAGTTAT GCTCAACTTC AAGGGTTTGG AGGAAAAAGG
  TTTTACCGGA GGCAGCTACT TCACTATAAC AGTACAAGCG TGTTATAGAA AAAGAATGAA
  GGCCTAGTCA AAGAATAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60846266	NES16011311	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47153031					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60846266	NES16011311	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134295623 () rs orientation: forward

Symbol	Name	Function Class
Gm43481	predicted gene 43481	296 bp downstream
Gtf2i	general transcription factor II I	within coordinates
Tssr53620	transcription start site region 53620	691 bp upstream
Tssr53621	transcription start site region 53621	151 bp upstream