rs47153758 SNP Detail

Summary

• ID
  rs47153758
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121421209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCAAAGGGG CTTGCTGCCA AATCTGATAA CCTAAGTTCA
  GTTCCCGGAA CCCACATGGA CTATCTGTGC CACGGCATGT ATGAGACCGC GCGCGCGCGC
  A
  CACACACACA CACACACACA CACGTAAAAA CCATCAAAAA GTAGTCATTC CCCTTACTTC
  TAAATGGACA GGATGTATAT ACACACACCA AGTATATAT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147637489	ENSMUSSNP331316	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47153758					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121421209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	943 bp proximal
Rr402304	regulatory region 402304	568 bp upstream
Rr402305	regulatory region 402305	1422 bp upstream
Rr440247	regulatory region 440247	within coordinates
Rr440248	regulatory region 440248	1473 bp proximal
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	913 bp upstream
Tssr96044	transcription start site region 96044	949 bp upstream
Tssr99623	transcription start site region 99623	569 bp downstream
Tssr99624	transcription start site region 99624	597 bp downstream
Tssr99625	transcription start site region 99625	618 bp downstream
Tssr99626	transcription start site region 99626	1406 bp downstream
Tssr99627	transcription start site region 99627	1426 bp downstream
Tssr99628	transcription start site region 99628	1509 bp downstream
Tssr99629	transcription start site region 99629	1537 bp downstream
Tssr99630	transcription start site region 99630	1565 bp downstream