rs47154151 SNP Detail

Summary

• ID
  rs47154151
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4523173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGAAGC AAGCCAGTAA
  GGAACATCCC TCCATGGCCT CTGCATCAGC TCCTGCTTCT TGACCTGCTT GAGTTCCAGT
  CCTGACTTCC TTTGGTGATG AACAGCAGTA TGGAAGTATA AGCCGAATAA ACCCTTTCCT
  CCCCAATTTG CTTCTTGGTC ATGATGTTTG TGCAGGAATA GAAACCGTGA CTAAGACAGC
  R
  TCTAACACAA CTTGAGCCCA CTCTGTGCAG ATCATTATTC CCTGTCCCAG AGCTCAACTC
  AATGCTCAGT TTCTACAGGC CCGTTTGTGC CACCCAGGCT CTACTCTGCA GAGACAGCTT
  CCTTTGCCAC GAGGTACCTG TGCCACTGCC TGCTTTCTGC TTAGAGTTAT CTCAAGCACA
  AGAGTCCATA GCCCCCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60964951	NES16164641	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47154151					SNP	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60964951	NES16164641	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4523173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	1353 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64334	transcription start site region 64334	763 bp downstream
Tssr64335	transcription start site region 64335	272 bp upstream
Tssr64336	transcription start site region 64336	1496 bp upstream
Tssr64337	transcription start site region 64337	1639 bp upstream
Tssr70483	transcription start site region 70483	1814 bp upstream
Tssr70484	transcription start site region 70484	1702 bp downstream