rs47154278 SNP Detail

Summary

• ID
  rs47154278
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28750352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAGGTGT GTGCTAAGGG
  ACCAAGACAA GAAAGGAAGG AGTTGTTAAG TTTGTTCTGA GTGCATGGGT AAGCGAGTGC
  CTGCGTGCAT GCATGATTAT GAATCCCAGA GCAGTGGTAA AGAACCCAAA AATCTGCCTT
  TTGGGGGCTT AACATTGGGG GAATGTCACA GATAACAGGA ATTCAGGTGT GAGGTGTTTC
  R
  CACACTCTCC TATACCTAGA GTATTTGCTT CCCAGATTCA TGGGGTGACT CTGGGATGTG
  AGATAATGGC TTTAGGAGTC ACTGCACACT GGGCTGTGGC CAGGGTCACT AATGGTGAAA
  GGCCAACGTG CATGGACTAG CTCACCCTAA AGGACATTTG TTTCTTTTTG AGCTTGGAGC
  TCTGGTCATT TTCCTTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146394978	ENSMUSSNP4213307	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47154278					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28750352 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddx31	DEAD/H box helicase 31			Intron
				Noncoding-Transcript-Variant
Rr553919	regulatory region 553919			484 bp proximal