rs47155347 SNP Detail

Summary

• ID
  rs47155347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81200748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCACGAC CGGAGGTGGG
  ATACTCACCG GGCGGCAGGC CACGCTGGCG ACTCTGAAAG CAGCCGTGCC AACGCGTGTG
  GGCCTCGCGG TACGGAGTGT CAAGAGCACG GGGCAGCTTG TACCAGGCAT CACCAGGTTC
  TGAGTTGGTC AGGCCGGTGA ACCACACCTG GCCGGCCGCA TCCCGTCCCA TGGGCGTGAA
  Y
  TTCCAGCGCA CGGCTTGTTT GATGGCCGGC GCCCAACGGG GCCCCTCCAG GGACACGTAG
  TCATTGCTGA GGGAGGGTGG GGACTGAGCC AGGGCGTCCT GCTGGTCCCA GCCAGCTTTC
  CTGTCCCAAC TCTTTGCCAA GGTGCTGGGT GAGAGTCATC CCCTTCTACC CATCTCCTCT
  GTGCACTTTC CCACCTGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52387629	NES15272386	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47155347					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52387629	NES15272386	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81200748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1975	CpG island 1975	within coordinates
Fzr1	fizzy and cell division cycle 20 related 1	1965 bp downstream
Mfsd12	major facilitator superfamily domain containing 12	within coordinates
Rr435631	regulatory region 435631	892 bp proximal
Tektip1	tektin bundle interacting protein 1	within coordinates
Tssr94743	transcription start site region 94743	876 bp downstream
Tssr94744	transcription start site region 94744	613 bp downstream
Tssr94745	transcription start site region 94745	542 bp downstream
Tssr94746	transcription start site region 94746	500 bp downstream
Tssr94747	transcription start site region 94747	488 bp downstream
Tssr98595	transcription start site region 98595	55 bp upstream
Tssr98596	transcription start site region 98596	870 bp downstream
Tssr98597	transcription start site region 98597	893 bp downstream
Tssr98598	transcription start site region 98598	920 bp downstream