rs47155554 SNP Detail

Summary

• ID
  rs47155554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58411396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAAATTC TTTTCTGTCT
  TTCCCTGAGA ATAGCTCCAA AGAATGGCTG CTCCTCAGAA TATTCTCAGC TGTGTCTCCT
  TTCTGCTGCT GCTGTTTCCA GATGTAACTA ACAGATGGCT CTGTAAGATT AGTATTTGCA
  GAAACTGAAC ACAGGGTGGC AATGTGTCAT TATTAAAAAT ATTAATGTAG TTATTCACTT
  Y
  CTGAGAAACA GCATAAGTGG AAATTTACAC ACACAAGAGA TTATCTTTTT ATTTTATTTG
  TTTGGTTTGA GACAAGGTCT CACTGTGTGG CTCTGGAGGG ACTGGAATTC ACTGTGTAGA
  CCAGGCTGGC TTAAATTTGT AATGCAAATT CTGCCTCCCA CGTGCTGGTG TTGAAGACAC
  GTGGCCCAGT GCCCAGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss135206864	ENSMUSSNP2110290	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs47155554					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58411396 () rs orientation: forward

Symbol	Name	Function Class
Gm66340	predicted gene, 66340	626 bp upstream
Rr375034	regulatory region 375034	54 bp upstream
Rr577237	regulatory region 577237	1748 bp distal
Rr577238	regulatory region 577238	35 bp distal
Tssr29204	transcription start site region 29204	1790 bp downstream