rs47158409 SNP Detail

Summary

• ID
  rs47158409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149720052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTAGAA GGCCTTTGGT
  GGGGGTTAGA ATATGAGGAG GGGTATCATG TGACATTAAA ATTACAAGCC CATGTATCAC
  CATGCAGGAG ATATCTCTTA CAGAAGGACG TTGTTACCAG GTTCATGCAC AGGTCTCTTC
  TCTAAGTAGA TGGGACTTTC TACACTTGAT CTTAGCCAAA AGGCAGAGAA GCAGTGTAGA
  Y
  CAATTTTCTG AGACCAAAGC AGCTCACAGG GTTTTTTTGT TGCACAGAAT AAACATGGGT
  GCACTAAACC TAAATGTGGT CCAGAGTTTG GCAGCATAAT GGCAGGAGGC AGGAAGCAAT
  GACAGGAGGA AGTCATCCTG ACAAAGAATT CTTTGCACCC ATTCCCAGTC TAACCTCTAT
  ATCCTCTGTG TTGCCTATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60858008	NES15990769	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47158409					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60858008	NES15990769	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149720052 () rs orientation: forward

Symbol	Name	Function Class
Gm71685	predicted gene, 71685	1629 bp downstream