rs47158889 SNP Detail

Summary

• ID
  rs47158889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134294520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAC ATGTATAAGG GACGGATGTG
  R
  GGAAGGCTTA GCTCCCTGGC AGACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss144502817	ENSMUSSNP1109145	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321695274	CHEV_5_134741536	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47158889					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134294520 () rs orientation: forward

Symbol	Name	Function Class
Gm43481	predicted gene 43481	1399 bp downstream
Gtf2i	general transcription factor II I	within coordinates
Tssr53619	transcription start site region 53619	1233 bp upstream
Tssr53620	transcription start site region 53620	411 bp downstream
Tssr53621	transcription start site region 53621	918 bp downstream