rs47160291 SNP Detail

Summary

• ID
  rs47160291
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153725779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA AAAGAAAGTC CCAAAGGGTG
  M
  AAAGCGGTAC AGGCCAAGCA GGTGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145750771	ENSMUSSNP3742784	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47160291					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153725779 () rs orientation: forward

Symbol	Name	Function Class
Teddm2	transmembrane epididymal family member 2	within coordinates
Tssr14286	transcription start site region 14286	711 bp downstream
Tssr14287	transcription start site region 14287	1003 bp downstream
Tssr14288	transcription start site region 14288	1015 bp downstream
Tssr14289	transcription start site region 14289	1050 bp downstream
Tssr14290	transcription start site region 14290	1134 bp downstream
Tssr14291	transcription start site region 14291	1156 bp downstream