rs47160525 SNP Detail

Summary

• ID
  rs47160525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45015862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGGTGAG GCCTCCTGAA
  GAGGTTGTTT GTAGAGGGCA GGGTTTTCCC CCAAGCAGTA GGAAACAGGG AGAACAAACC
  CTGCTTAGGA CTAAAGTTGC CAGTCAAGAG CACCAGCACC ATAGGTAGGA GCCTTCCGCT
  GTGCCCAGCT CTGGCTAAAC TAGATGTAAT AAAGTATGTT AGGTCATTGG ACAAGACTGG
  Y
  AGGAGACTGA AAGGTAAAAT TAGTGGGTAG GGATGTAGTT AAGGTTATAG AGTGCTTGTC
  TCCCAGGCAT GAAGCCCTGG GCTTGATTCC CAGCACTGTG TAAGTCAGTT GTGGTAGTAC
  ATACCTATAA TTCCGACTAA GAAAGTGGAG GCAGGTGGAC ACAGAGTTCA GGGCCATTCT
  TGGCTGCATA CCTAGTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61388962	NES16766753	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	C	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47160525					SNP	C	T	T	T	C	T	C	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388962	NES16766753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45015862 () rs orientation: forward

Symbol	Name	Function Class
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	621 bp distal
Rr677841	regulatory region 677841	1155 bp proximal
Tssr84725	transcription start site region 84725	1680 bp downstream
Tssr84726	transcription start site region 84726	702 bp downstream
Tssr84727	transcription start site region 84727	671 bp downstream
Tssr84728	transcription start site region 84728	644 bp downstream