rs47160710 SNP Detail

Summary

• ID
  rs47160710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79619259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACAGGTT GCTATTCATG
  TCTGCCCCAG TAGAGGGCTG AAATTCAAAC AGCCCTCACA GAGCGTCCAG TAGAACCAGG
  GGATGAACTT GCCCGAACCA CATCCCAGAT CCAGGTCACA AACGCTGACA CTTGAGTGTA
  GACATCCGGA GTCTTGGGGT CACCACACCA GAGGCCTGAG AAAGATACAA GACCATGGGC
  Y
  CGTCTTCCAC AGACCAAGGG TCCCCCAGAA TCTGCCTGGA GTGAAAAAAA GTTTGAGGTT
  AAGAGTTATT CCTGGGGTCT TGTGTCCTTG TCCCCCTAAA GGAGTCTCTT ATAAGCAGAC
  AGGTAAGTGG TCTTTGAGCA ATGCAAAGCC TACATAGCTG TGTGCAATAG CCTTCTGATG
  CATCTCCCCA AGAAGCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52386759	NES15268962	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47160710					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52386759	NES15268962	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79619259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1812	CpG island 1812	915 bp proximal
Fstl3	follistatin-like 3	795 bp downstream
Prss57	serine protease 57	within coordinates