rs47161231 SNP Detail

Summary

• ID
  rs47161231
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGCACAT GTAAGAGGTT
  CTGGGAGTGT GAAAGACCAC CCAAACACAC AGTATCCCTC CATACCAGCT GCAGCGGGCG
  CTCAGCTGTG CCTGGGTGTG CTGTTGGCTG CTTGTGCCTA GGAAGGAATG CAGGCTCTCT
  GTCGCTTGTT CCTCCCCTTT TGCCTCCTCT CCCTAAGCAT CTCTGAGTGA CCATGCCTAT
  W
  TCTCTCTGCT TCCTAGTGTG TGTGGCTTGT GGGAGCCCTG GGCTCATTTC CTGGTCTCTC
  TGCCGTAGTG TGCATTTCTA GAAATGGTTT AAAAATTCTC AGCGACTGGT AAGAGAGAGA
  AATCGAGTTT CTTTTTCTTT TTTCTTGCTA GCCCATCATA TAAGGGTAAA CTGGGGGGCA
  TGAAAGTAAA ACAACGAATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874508	ENSMUSSNP1765200	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss320958004	CHEV_3_127600366	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47161231					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	925 bp distal
Fam241a	family with sequence similarity 241, member A	1125 bp upstream
Rr398009	regulatory region 398009	875 bp downstream
Rr584896	regulatory region 584896	1429 bp distal
Rr584897	regulatory region 584897	634 bp distal
Tssr35607	transcription start site region 35607	1935 bp upstream
Tssr35608	transcription start site region 35608	1215 bp upstream
Tssr35609	transcription start site region 35609	1178 bp upstream
Tssr35610	transcription start site region 35610	1111 bp upstream