rs47161567 SNP Detail

Summary

• ID
  rs47161567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45173565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCT GGAAAATGGG CTTTCAGGAC
  Y
  ACCAGCCCTG GTTGTTTCTC TTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61388328	NES16764999	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T		C	T	C		C
ss136408150	ENSMUSSNP6711346	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						T
ss322942704	CHEV_9_45070350	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47161567					SNP	T	T	T	T	T	C	T	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388328	NES16764999	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45173565 () rs orientation: forward

Symbol	Name	Function Class
Gm20612	predicted gene 20612	977 bp downstream
Il10ra	interleukin 10 receptor, alpha	within coordinates
Rr677873	regulatory region 677873	468 bp distal
Tssr89253	transcription start site region 89253	622 bp downstream
Tssr89254	transcription start site region 89254	689 bp downstream
Tssr89255	transcription start site region 89255	779 bp downstream
Tssr89256	transcription start site region 89256	803 bp downstream
Tssr89257	transcription start site region 89257	1909 bp downstream
Tssr89258	transcription start site region 89258	1950 bp downstream
Tssr89259	transcription start site region 89259	1973 bp downstream